Patrick J. Tranel

Professor

Chapters in Books

  • Tranel, P. J. 2002.Weeds and weed control strategies, Chapter 17. Pp. 446-471 in M.J. Chrispeels and D. E. Sadava (eds.) Plants, Genes, and Crop Biotechnology, 2nd Edition. Jones and Bartlett Publishers, Boston.
  • Tranel, P. J. and F. Trucco. 2004. Molecular biology applied to weed science. Pages 745-747 In R. M. Goodman (ed.) Encyclopedia of Plant and Crop Science. Dekker, New York.
  • Hu, J., P. J. Tranel, C. N. Stewart Jr., and J. S. Yuan. 2009. Molecular and genomic mechanisms of non-target-site herbicide resistance. Pp 149-161 in C. N. Stewart Jr. (ed.) Weedy and Invasive Plant Genomics. Blackwell Publishing, Ames.
  • Tranel, P. J. and F. Trucco. 2009. 21st-century weed science: A call for Amaranthus genomics. Pp 53-81 in C. N. Stewart Jr. (ed.) Weedy and Invasive Plant Genomics. Blackwell Publishing, Ames.
  • Stewart, C. N., Jr., Y. Peng, L. G. Abercrombie, M. D. Halfhill, M. R. Rao, P. Ranjan,  J Hu, R. D. Sammons, G. R. Heck, P. J. Tranel, and J. S. Yuan. 2010. Genomics of glyphosate resistance. Pp 149-164 in V. Nandula (ed.) Glyphosate Resistance in Weeds. Blackwell Publishing, Ames.
  • Trucco, F. and P. J. Tranel. 2011. Amaranthus. Pp 11-21 in C. Kole (ed.) Wild Crop Relatives: Genomic and Breeding Resources: Vegetables. Springer, New York.

Selected Articles in Journals

  • Review articles
  • Tranel, P. J. and T. R. Wright. 2002. Resistance of weeds to ALS-inhibiting herbicides: What have we learned? Weed Sci. 50:700-712.
  • Yuan, J. S., P. J. Tranel, and C. N. Stewart Jr. 2007. Non-target-site herbicide resistance: a family business. Trends Plant Sci. 12:6-13.
  • Lee, R. M. and P. J. Tranel. 2008. Utilization of DNA microarrays in weed science research. Weed Sci. 56:283-289.
  • Tranel, P. J. and D. P. Horvath. 2009. Molecular biology and genomics: new tools for weed science. Bioscience 59:207-215.
  • Stewart, C. N., Jr., P. J. Tranel, D. P. Horvath, J. V. Anderson, L. H. Rieseberg, J. H. Westwood, C. A. Mallory-Smith, M. L. Zapiola, and K. M. Dlugosch. 2009. Evolution of weediness and invasiveness: charting the course for weed genomics. Weed Sci. 57:451-462.
  • Tranel, P. J., C. W. Riggins, M. S. Bell, and A. G. Hager. 2011. Herbicide resistances in Amaranthus tuberculatus: a call for new options. J. Agric. Food Chem. 59:5808-5812.
  • Burgos, N. R., P. J. Tranel, J. C. Streibig, V. M. Davis, D. Shaner, J. K. Norsworthy, and C. Ritz. 2013. Review: Confirmation of resistance to herbicides and evaluation of resistance levels. Weed Sci. 61:4-20.
  • Busi, R., M. M. Vila-Aiub, H. J. Beckie, T. A. Gaines, D. E. Goggin, S. S. Kaundun, M. Lacoste, P. Neve, S. J. Nissen, J. K. Norsworthy, M. Renton, D. L. Shaner, P. J. Tranel, T. Wright, Q. Yu, and S. B. Powles. 2013. Herbicide-resistant weeds: from research and knowledge to future needs. Evol. Appl. 6:1218-1221.
  • Dayan, F. E., D. K. Owens, P. J. Tranel, C. Preston, and S. O. Duke. 2014. Evolution of resistance to phytoene desaturase and protoporphyrinogen oxidase inhibitors – state of knowledge. Pest Manag. Sci. 70:1358-1366.
  • Délye, C., A. Duhoux, F. Pernin, C. W. Riggins, and P. J. Tranel. 2015. Molecular mechanisms of herbicide resistance. Weed Sci. Special Issue:91-115.
  • Research papers
  • Tranel, P. J. and J. Dekker. 1992. Inheritance of clomazone tolerance in maize seedlings. Maydica 37:137-142.
  • Tranel, P. J., D. R. Gealy, and A. C. Kennedy. 1993. Inhibition of downy brome (Bromus tectorum) root growth by a phytotoxin from Pseudomonas fluorescens strain D7. Weed Technol. 7:134-139.
  • Tranel, P. J., D. R. Gealy, and G. P. Irzyk. 1993. Physiological responses of downy brome (Bromus tectorum) roots to Pseudomonas fluorescens strain D7 phytotoxin. Weed Sci. 41:483-489.
  • Tranel, P. J., J. Froehlich, A. Goyal, and K. Keegstra. 1995. A component of the chloroplastic protein import apparatus is targeted to the outer envelope membrane via a novel pathway. EMBO J. 14:2436-2446.
  • Tranel, P. J. and K. Keegstra. 1996. A novel, bipartite transit peptide targets OEP75 to the outer membrane of the chloroplastic envelope. Plant Cell 8:2093-2104.
  • Foes, M. J., L. Liu, P. J. Tranel, L. M. Wax, and E. W. Stoller. 1998. A biotype of common waterhemp (Amaranthus rudis) resistant to triazine and ALS herbicides. Weed Sci. 46:514-520.
  • Foes, M. J., L. Liu, G. Vigue, E. W. Stoller, L. M. Wax, and P. J. Tranel. 1999. A kochia (Kochia scoparia) biotype resistant to triazine and ALS-inhibiting herbicides. Weed Sci. 47:20-27.
  • Tranel, P. J. and J. J. Wassom. 2001. Genetic relationships of common cocklebur accessions from the United States. Weed Sci. 49:318-325.
  • Patzoldt, W. L., P. J. Tranel, A. L. Alexander, and P. R. Schmitzer. 2001. A common ragweed population resistant to cloransulam-methyl. Weed Sci. 49:485-490.
  • Wassom, J. J., P. J. Tranel, and L. M. Wax. 2002. Variation among U.S. accessions of common cocklebur (Xanthium strumarium). Weed Technol. 16:171-179.
  • Tranel, P. J., J. J. Wassom, M. R. Jeschke, and A. L. Rayburn. 2002. Transmission of herbicide resistance from a monoecious to a dioecious weedy Amaranthus species. Theor. Appl. Genet. 105:674-679.
  • Patzoldt, W. L. and P. J. Tranel. 2002. Molecular analysis of cloransulam resistance in a population of giant ragweed. Weed Sci. 50:299-305.
  • Patzoldt, W. L., P. J. Tranel, and A. G. Hager. 2002. Variable herbicide responses among Illinois waterhemp (Amaranthus rudis and A. tuberculatus) populations. Crop Prot. 21:707-712.
  • Jeschke, M. R., P. J. Tranel, and A. L. Rayburn. 2003. DNA content analysis of smooth pigweed (Amaranthus hybridus) and tall waterhemp (A. tuberculatus): implications for hybrid detection. Weed Sci. 51:1-3.
  • Tranel, P. J., M. R. Jeschke, J. J. Wassom, D. J. Maxwell, and L. M. Wax. 2003. Variation in soybean (Glycine max (L.) Merr.) interference among common cocklebur (Xanthium strumarium L.) accessions. Crop Prot. 22:375-380.
  • Ainsworth, E. A., P. J. Tranel, B. G. Drake, and S. P. Long. 2003. The clonal structure of Quercus geminata revealed by conserved microsatellite loci. Mol. Ecol. 12:527-532.
  • Wassom, J. J., A. W. Knepp, P. J. Tranel, and L. M. Wax. 2003. Variability in photosynthetic rates and accumulated biomass among greenhouse-grown common cocklebur (Xanthium strumarium) accessions. Weed Technol. 17:84-88.
  • Patzoldt, W. L., B. S. Dixon, and P. J. Tranel. 2003. Triazine resistance in Amaranthus tuberculatus (Moq) Sauer that is not site-of-action mediated. Pest Manag. Sci. 59:1134-1142.
  • Tranel, P. J., W. Jiang, W. L. Patzoldt, and T. R. Wright. 2004. Intraspecific variability of the acetolactate synthase gene. Weed Sci. 52:236-241.
  • Maertens, K. D., C. L. Sprague, P. J. Tranel, and R. A. Hines. 2004. Amaranthus hybridus populations resistant to triazine and acetolactate synthase-inhibiting herbicides. Weed Res. 44:21-26.
  • Trucco, F., M. R. Jeschke, A. L. Rayburn, and P. J. Tranel. 2005. Amaranthus hybridus can be pollinated frequently by A. tuberculatus under field conditions. Heredity 94:64-70.
  • Patzoldt, W. L., P. J. Tranel, and A. G. Hager. 2005. A waterhemp (Amaranthus tuberculatus) biotype with multiple resistance across three herbicide sites of action. Weed Sci. 53:30-36.
  • Trucco, F., M. R. Jeschke, A. L. Rayburn, and P. J. Tranel. 2005. Promiscuity in weedy amaranths: high frequency of female tall waterhemp (Amaranthus tuberculatus) x smooth pigweed (A. hybridus) hybridization under field conditions. Weed Sci. 53:46-54.
  • Wassom, J. J. and P. J. Tranel. 2005. Amplified fragment length polymorphism-based genetic relationships among weedy Amaranthus species. J. Heredity. 96:410-416.
  • Zheng, D., W. L. Patzoldt, and P. J. Tranel. 2005. Association of the W574L ALS substitution with resistance to cloransulam and imazamox in common ragweed (Ambrosia artemisiifolia). Weed Sci. 53:424-430.
  • Trucco, F., T. Tatum, A. L. Rayburn, and P. J. Tranel. 2005. Fertility, segregation at a herbicide-resistance locus, and genome structure in BC1 hybrids from two important weedy Amaranthus species. Mol. Ecol. 14:2717-2728.
  • Rayburn, A. L., R. McCloskey, T. C. Tatum, M. R. Jeschke, and P. J. Tranel. 2005. Genome size analysis of weedy Amaranthus species. Crop Sci. 45:2557-2562.
  • Tatum, T. C., R. Skirvin, P. J. Tranel, M. Norton, and A. L. Rayburn. 2005. In vitro procedure for obtaining mitotic chromosomes from weedy Amaranthus species. In Vitro Cell. Dev.-Pl. 41:844-847.
  • Trucco, F., A. G. Hager, and P. J. Tranel. 2006. Acetolactate synthase mutation conferring imidazolinone-specific herbicide resistance in Amaranthus hybridus. J. Plant Physiol. 163:475-479.
  • Trucco, F., T. Tatum, K. R. Robertson, A. L. Rayburn, and P. J. Tranel. 2006. Characterization of waterhemp (Amaranthus tuberculatus) x smooth pigweed (A. hybridus) F1 hybrids. Weed Technol. 20:14-22.
  • Patzoldt, W. L., A. G. Hager, J. S. McCormick, and P. J. Tranel. 2006. A codon deletion confers resistance to herbicides inhibiting protoporphyrinogen oxidase. Proc. Natl. Acad. Sci. USA. 103:12329-12334. [Also see associated In This Issue (103:1211-12212) and Commentary (103:12215-122160].
  • Trucco, F., D. Zheng, A. J. Woodyard, J. R. Walter, T. C. Tatum, A. L. Rayburn, and P. J. Tranel. 2007. Non-hybrid progeny from crosses of dioecious amaranths: implications for gene flow research. Weed Sci. 55:119-122.
  • Patzoldt, W. L. and P. J. Tranel. 2007. Multiple ALS mutations confer herbicide resistance in waterhemp (Amaranthus tuberculatus). Weed Sci. 55:421-428.
  • Volenberg, D. S., P. J. Tranel, J. F. Holt, F. W. Simmons, S. C. Weller, A. Sharkhuu, and D. E. Riechers. 2007. Assessment of two biotypes of Solanum ptycanthum that differ in resistance levels to imazamox. Weed Res. 47:353-363.
  • Volenberg, D. S., W. L. Patzoldt, A. G. Hager, and P. J. Tranel. 2007. Responses of contemporary and historical waterhemp (Amaranthus tuberculatus) accessions to glyphosate. Weed Sci. 55:327-333.
  • Brotherton, J. E., M. R. Jeschke, P. J. Tranel, and J. M. Widholm. 2007. Identification of Arabidopsis thaliana variants with differential glyphosate responses. J. Plant Physiol. 164:1337-1345.
  • Hugie, J. A., G. A. Bollero, P. J. Tranel, and D. E. Riechers. 2008. Defining the rate requirements for synergism between mesotrione and atrazine in redroot pigweed (Amaranthus retroflexus). Weed Sci. 56:265-270.
  • Lee, R. M., A. G. Hager, and P. J. Tranel. 2008. Prevalence of a novel resistance mechanism to PPO-inhibiting herbicides in waterhemp (Amaranthus tuberculatus). Weed Sci. 56:371-375.
  • Zhu, J., W. L. Patzoldt, R. T. Shealy, L. O. Vodkin, S. J. Clough, and P. J. Tranel. 2008. Transcriptome response to glyphosate in sensitive and resistant soybean. J. Agric. Food Chem. 56:6355-6363.
  • Zhu, J., W. L. Patzoldt, O. Radwan, P. J. Tranel, and S. J. Clough. 2009. Effects of photosystem-II-interfering herbicides atrazine and bentazon on the soybean transcriptome. Plant Gen. 2:191-205.
  • Lee, R. M., J. Thimmapuram, K. A. Thinglum, G. Gong, A. G. Hernandez, C. L. Wright, R. W. Kim, M. A. Mikel, and P. J. Tranel. 2009. Sampling the waterhemp (Amaranthus tuberculatus) genome using pyrosequencing technology. Weed Sci. 57: 463-469.
  • Trucco, F., T. Tatum, A. L. Rayburn, and P. J. Tranel. 2009. Out of the swamp: Unidirectional hybridization with weedy species may explain the prevalence of Amaranthus tuberculatus as a weed. New Phytol. 184:819-827.
  • Davis, V. M., G. R. Kruger, S. G. Hallett, P. J. Tranel, and W. G. Johnson. 2010. Heritability of glyphosate resistance in Indiana horseweed (Conyza canadensis) populations. Weed Sci. 58:30-38.
  • Gaines, T. A., W. Zhang, D. Wang, B. Bukun, S. T. Chisholm, D. L. Shaner, S. J. Nissen, W. L. Patzoldt, P. J. Tranel, A. S. Culpepper, T. L. Grey, T. M. Webster, W. K. Vencill, R. D. Sammons, J. Jiang, C. Preston, J. E. Leach, and P. Westra. 2010. Gene amplification confers glyphosate resistance in Amaranthus palmeri. Proc. Natl. Acad. Sci. USA. 107:1029-1034. [Also see associated Commentary (107:955-956)].
  • Bell, M. S. and P. J. Tranel. 2010. Time requirements from pollination to seed maturity in waterhemp (Amaranthus tuberculatus). Weed Sci. 58:167-173.
  • Dayan, F. E., P. R. Daga, S. O. Duke, R. M. Lee, P. J. Tranel, and R. J. Doerksen. 2010. Biochemical and structural consequences of a glycine deletion in the alpha-8 helix of protoporphyrinogen oxidase. Biochim. Biophys. Acta 1804:1548-1556.
  • Peng, Y., L. G. Abercrombie, J. S. Yuan, C. W. Riggins, R. D. Sammons, P. J. Tranel, and C. N. Stewart Jr. 2010. Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of non-target herbicide resistance genes. Pest Manag. Sci. 66:1053-1062. [Also see associated Commentary (66:1041)].
  • Riggins, C. W., Y. Peng, C. N. Stewart Jr., and P. J. Tranel. 2010. Characterization of de novo transcriptome for waterhemp (Amaranthus tuberculatus) using GS-FLX 454 pyrosequencing and its application for studies of herbicide target-site genes. Pest Manag. Sci. 66:1042-1052. [Also see associated Commentary (66:1041)].
  • Thinglum, K. A., C. W. Riggins, A. S. Davis, K. W. Bradley, K. Al-Khatib, and P. J. Tranel. 2011. Wide distribution of the waterhemp (Amaranthus tuberculatus) deltaG210 PPX2 mutation, which confers resistance to PPO-inhibiting herbicides. Weed Sci. 59:22-27.
  • Hausman, N. E., S. Singh, P. J. Tranel, D. E. Riechers, S. S. Kaundun, N. D. Polge, D. A. Thomas, and A. G. Hager. 2011. Resistance to HPPD-inhibiting herbicides in a population of waterhemp (Amaranthus tuberculatus) from Illinois, United States. Pest Manag. Sci. 67:258-261.
  • Zheng, D., G. R. Kruger, S. Singh, V. M. Davis, P. J. Tranel, S. C. Weller, and W. G. Johnson. 2011. Cross-resistance of horseweed (Conyza canadensis) populations with three different ALS mutations.Pest Manag. Sci. 67:1486-1492.
  • Riggins, C. W., and P. J. Tranel. 2012. Will the Amaranthus tuberculatus resistance mechanism to PPO-inhibiting herbicides evolve in other Amaranthus species? Int. J. Agron. Vol. 2012, doi:10.1155/2012/305764.
  • Bernards, M. L., R. J. Crespo, G. R. Kruger, R. Gaussoin, and P. J. Tranel. 2012. A waterhemp (Amaranthus tuberculatus) population resistant to 2,4-D. Weed Sci. 60:379-384.
  • Rousonelos, S. L. R. M. Lee, M. S. Moreira, M. J. VanGessel, and P. J. Tranel. 2012. Characterization of a common ragweed (Ambrosia artemisiifolia) population resistant to ALS- and PPO-inhibiting herbicides. Weed Sci. 60:335-344.
  • Liu, J., A. S. Davis, and P. J. Tranel. 2012. Pollen biology and dispersal dynamics in waterhemp (Amaranthus tuberculatus). Weed Sci. 60:416-422.
  • Panozzo, S., L. Scarabel, P. J. Tranel, and M. Sattin. 2013. Target-site resistance to ALS inhibitors in the polyploid species Echinochloa crus-galli. Pestic. Biochem. Physiol. 105:93-101.
  • Bell, M. S., A. G. Hager, and P. J. Tranel. 2013. Multiple resistance to herbicides from four site-of-action groups in waterhemp (Amaranthus tuberculatus). Weed Sci. 61:460-468.
  • Gaines, T. A., A. A. Wright, W. T. Molin, L. Lorentz, C. W. Riggins, P. J. Tranel, R. Beffa, P. Westra, and S. B. Powles. 2013. Identification of genetic elements associated with EPSPS gene amplification. PLoS ONE 8(6): e65819. doi:10.1371/journal.pone.0065819.
  • Ma, R., S. S. Kaundun, P. J. Tranel, C. W. Riggins, D. L. McGinness, A. G. Hager, T. R. Hawkes, E. McIndoe, and D. E. Riechers. 2013. Distinct detoxification mechanisms confer resistance to mesotrione and atrazine in a population of waterhemp (Amaranthus tuberculatus). Plant Physiol. 163:363-377.
  • Hausman, N. E., P. J. Tranel, D. E. Riechers, D. J. Maxwell, L. C. Gonzini, and A. G. Hager. 2013. Responses of an HPPD inhibitor-resistant waterhemp (Amaranthus tuberculatus) population to soil-residual herbicides. Weed Technol. 27:704-711.
  • Brenner, D. M., W. G. Johnson, C. L. Sprague, P. J. Tranel, and B. G. Young. 2013. Crop-weed hybrids are more frequent for the grain amaranth ‘Plainsman’ than for ‘D136-1’. Genet. Resour. Crop. Evol. 60:2201-2205.
  • Yang, S., G. Hao, F. E. Dayan, P. J. Tranel, and G. Yang. 2013. Insight into the structural requirements of protoporphyrinogen oxidase inhibitors: molecular docking and CoMFA of diphenyl ether, isoxazole phenyl, and pyrazole phenyl ether. Chinese J. Chem. 31:1153-1158.
  • Tatum-Parker, T., F. Trucco, P. A.[sic] Tranel, and A. L. Rayburn. 2015. Micropollen formation in F1 hybrids and backcrosses of waterhemp (Amaranthus tuberculatus) x smooth pigweed (A. hybridus) as a quick method for determination of interspecific hybridization events. J. Agric. Sci. 7:1-7.
  • Schultz, J. L., L. A. Chatham, C. W. Riggins, P. J. Tranel, and K. W. Bradley. 2015. Distribution of herbicide resistances and molecular mechanisms conferring resistance in Missouri waterhemp (Amaranthus rudis) populations. Weed Sci. 63:336-345.
  • Chatham, L. A., C. Wu, C. W. Riggins, A. G. Hager, B. G. Young, G. K. Roskamp, and P. J. Tranel. 2015. EPSPS gene amplification is present in the majority of glyphosate-resistant Illinois waterhemp (Amaranthus tuberculatus) populations. Weed Technol. 29:48-55.
  • Wuerffel, R. J., J. M. Young, P. J. Tranel, and B. G. Young. 2015. Soil-residual PPO-inhibiting herbicides influence the frequency of associated resistance in Amaranthus tuberculatus. Weed Sci. 63:529–538.
  • Guo, J., C. W. Riggins, N. E. Hausman, A. G. Hager, D. E. Riechers, A. S. Davis, and P. J. Tranel. 2015. Non-target-site resistance to ALS inhibitors in waterhemp (Amaranthus tuberculatus). Weed Sci. 63:399–407.
  • Chatham, L. A., K. W. Bradley, G. R. Kruger, J. R. Martin, M.D.K. Owen, D. E. Peterson, J. Mithila, and P. J. Tranel. 2015. A multi-state study of the association between glyphosate resistance and EPSPS gene amplification in waterhemp (Amaranthus tuberculatus). Weed Sci. 63:569-577.